* samtools-0.1.2-10

[samtools.git] / Makefile

diff --git a/Makefile b/Makefile
index 69ed702331f825cd17c6f8530de2a232d1abcf26..6b60a7b5ab4efaf326bcc8c8e7d5064790d3c8b8 100644 (file)
--- a/Makefile
+++ b/Makefile
@@ -22,7 +22,7 @@ all-recur lib-recur clean-recur cleanlocal-recur install-recur:
                list='$(SUBDIRS)'; for subdir in $$list; do \
                        cd $$subdir; \
                        $(MAKE) CC="$(CC)" CXX="$(CXX)" DFLAGS="$(DFLAGS)" CFLAGS="$(CFLAGS)" \
-                               INCLUDES="$(INCLUDES)" $$target || exit 1; \
+                               INCLUDES="$(INCLUDES)" LIBS="$(LIBS)" $$target || exit 1; \
                        cd $$wdir; \
                done;
 
@@ -46,13 +46,14 @@ razip.o:razf.h
 bam.o:bam.h razf.h bam_endian.h
 bam_import.o:bam.h kseq.h khash.h razf.h
 bam_pileup.o:bam.h razf.h ksort.h
-bam_plcmd.o:bam.h faidx.h bam_maqcns.h
+bam_plcmd.o:bam.h faidx.h bam_maqcns.h glf.h
 bam_index.o:bam.h khash.h ksort.h razf.h bam_endian.h
 bam_lpileup.o:bam.h ksort.h
 bam_tview.o:bam.h faidx.h bam_maqcns.h
 bam_maqcns.o:bam.h ksort.h bam_maqcns.h
 bam_sort.o:bam.h ksort.h razf.h
 razf.o:razf.h
+glf.o:glf.h
 
 faidx.o:faidx.h razf.h khash.h
 faidx_main.o:faidx.h razf.h