Package: ape
-Version: 2.6-2
-Date: 2010-11-24
+Version: 3.0
+Date: 2012-02-03
Title: Analyses of Phylogenetics and Evolution
-Author: Emmanuel Paradis, Ben Bolker, Julien Claude, Hoa Sien Cuong, Richard Desper, Benoit Durand, Julien Dutheil, Olivier Gascuel, Christoph Heibl, Daniel Lawson, Vincent Lefort, Pierre Legendre, Jim Lemon, Yvonnick Noel, Johan Nylander, Rainer Opgen-Rhein, Klaus Schliep, Korbinian Strimmer, Damien de Vienne
+Author: Emmanuel Paradis, Ben Bolker, Julien Claude, Hoa Sien Cuong, Richard Desper, Benoit Durand, Julien Dutheil, Olivier Gascuel, Christoph Heibl, Daniel Lawson, Vincent Lefort, Pierre Legendre, Jim Lemon, Yvonnick Noel, Johan Nylander, Rainer Opgen-Rhein, Andrei-Alin Popescu, Klaus Schliep, Korbinian Strimmer, Damien de Vienne
Maintainer: Emmanuel Paradis <Emmanuel.Paradis@ird.fr>
Depends: R (>= 2.6.0)
Suggests: gee
skyline plots, estimation of absolute evolutionary rates and
clock-like trees using mean path lengths, non-parametric rate
smoothing and penalized likelihood. Phylogeny estimation can be
- done with the NJ, BIONJ, and ME methods.
+ done with the NJ, BIONJ, ME, MVR, SDM, and triangle methods, and
+ several methods handling incomplete distance matrices (NJ*, BIONJ*,
+ MVR*, and the corresponding triangle method).
License: GPL (>= 2)
URL: http://ape.mpl.ird.fr/