changed some data sets (made lighter) + clarified man page for rcoal()

[ape.git] / Changes

diff --git a/Changes b/Changes
index a99d5d528217a6585821ef5424a188ad11c4f68c..988dd6f1956c1ff5ea4138980f73348327f6bd73 100644 (file)
--- a/Changes
+++ b/Changes
@@ -1,3 +1,26 @@
+               CHANGES IN APE VERSION 2.2-2
+
+
+NEW FEATURES
+
+    o dist.gene() has been substantially improved and gains an option
+      'pairwise.deletion'.
+
+
+BUG FIXES
+
+    o prop.part() failed with a single tree with the default option
+     'check.labels = TRUE'.
+
+
+OTHER CHANGES
+
+    o The data sets bird.orders and bird.families are now stored as
+      Newick strings; e.g., the command data(bird.orders) calls
+      read.tree().
+
+
+
                CHANGES IN APE VERSION 2.2-1
 
 
@@ -225,9 +248,9 @@ BUG FIXES
 
 OTHER CHANGES
 
-    o The code of mlphylo() has almost entirely rewritten, and should
-      be much stabler. The options have been also greatly simplified
-      (see ?mlphylo and ?DNAmodel for details).
+    o The code of mlphylo() has been almost entirely rewritten, and
+      should be much stabler. The options have been also greatly
+      simplified (see ?mlphylo and ?DNAmodel for details).
 
     o The internal function nTips has been renamed klastorin_nTips.