doc for corBlomberg

[ape.git] / Changes

diff --git a/Changes b/Changes
index 3eaf5b7a8c52a99ccc0cc4263ec0652c0e9dd5f3..05cbfab4053462414807edd72283904d7d2d8097 100644 (file)
--- a/Changes
+++ b/Changes
@@ -1,13 +1,25 @@
-               CHANGES IN APE VERSION 2.1-4
+               CHANGES IN APE VERSION 2.2
 
 
 NEW FEATURES
 
     o Four new functions have been written by Damien de Vienne for the
-      graphical exploration of large trees (plot.cophylo, subtrees,
+      graphical exploration of large trees (cophyloplot, subtrees,
       subtreeplot), and to return the graphical coordinates of tree
       (without plotting).
 
+    o The new functions corPagel and corBlomberg implement the Pagel's
+      "lambda" and Blomberg et al.'s "ACDC" correlation structures.
+
+    o chronopl() has been improved and gains several options: see its
+      help page for details.
+
+    o boot.phylo() has now an option 'trees' to possibly return the
+      bootstraped trees (the default is FALSE).
+
+    o prop.part() has been improved and should now be faster in all
+      situations.
+
 
 BUG FIXES
 
@@ -23,13 +35,12 @@ BUG FIXES
     o zoom() failed when tip labels were used instead of their numbers
       (thanks to Yan Wong for the fix).
 
-    o drop.tip() failed with some trees  (fixed by Yan Wong).
-
+    o drop.tip() failed with some trees (fixed by Yan Wong).
 
-OTHER CHANGES
+    o seg.sites() failed with a list.
 
-    o chronopl() has been improved and gains several options: see its
-      help page for details.
+    o consensus() failed in some cases. The function has been improved
+      as well and is faster.