fixing zoom()

[ape.git] / ChangeLog

diff --git a/ChangeLog b/ChangeLog
index 98602f93fd35b93c2965986ebbc415dd68b2f902..e5380d8c6373333947086d4112811b004f770f17 100644 (file)
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@@ -1,3 +1,38 @@
+               CHANGES IN APE VERSION 2.3-3
+
+
+BUG FIXES
+
+    o add.scale.bar() always drew a horizontal bar.
+
+    o zoom() shuffled tips with unrooted trees.
+
+
+
+               CHANGES IN APE VERSION 2.3-2
+
+
+BUG FIXES
+
+    o all.equal.phylo() did not compare unrooted trees correctly.
+
+    o dist.topo(... method = "PH85") did not treat unrooted trees
+      correctly (thanks to Tim Wallstrom for the fix).
+
+    o root() sometimes failed to test for the monophyly of the
+      outgroup correctly.
+
+    o extract.clade() sometimes included too many edges.
+
+    o vcv.phylo() did not work correctly when the tree is in
+      "pruningwise" order.
+
+    o nj() did not handle correctly distance matrices with many 0's.
+      The code has also been significantly improved: 7, 70, 160 times
+      faster with n = 100, 500, 1000, respectively.
+
+
+
                CHANGES IN APE VERSION 2.3-1