fixing nj() with many 0 distances

[ape.git] / ChangeLog

diff --git a/ChangeLog b/ChangeLog
index 98602f93fd35b93c2965986ebbc415dd68b2f902..e14ba74e0a6eb555f3ec04066d30911aed80ff96 100644 (file)
--- a/ChangeLog
+++ b/ChangeLog
@@ -1,3 +1,25 @@
+               CHANGES IN APE VERSION 2.3-2
+
+
+BUG FIXES
+
+    o all.equal.phylo() did not compare unrooted trees correctly.
+
+    o dist.topo(... method = "PH85") did not treat unrooted trees
+      correctly (thanks to Tim Wallstrom for the fix).
+
+    o root() sometimes failed to test for the monophyly of the
+      outgroup correctly.
+
+    o extract.clade() sometimes included too many edges.
+
+    o vcv.phylo() did not work correctly when the tree is in
+      "pruningwise" order.
+
+    o nj() did not handle correctly distance matrices with many 0's.
+
+
+
                CHANGES IN APE VERSION 2.3-1