removing NPRS + change bind.tree.Rd to avoid crash during R CMD check ape

[ape.git] / ChangeLog

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                CHANGES IN APE VERSION 2.5-2
 
 
+NEW FEATURES
+
+    o There is now a print method for results from ace().
+
+
 BUG FIXES
 
     o as.phylo.hclust() used to multiply edge lengths by 2.
 
+    o A minor bug was fixed in rTraitDisc().
+
+    o ace() sometimes failed (parameter value was NaN and the optimisation
+      failed).
+
 
 DEPRECATED & DEFUNCT
 
     o evolve.phylo() and plot.ancestral() have been removed.
 
+    o chronogram(), ratogram(), and NPRS.criterion() have been removed.
+
+
+OTHER CHANGES
+
+    o nj() has been improved and is now about 30% faster.
+
 
 
                CHANGES IN APE VERSION 2.5-1