removing NPRS + change bind.tree.Rd to avoid crash during R CMD check ape

[ape.git] / ChangeLog

diff --git a/ChangeLog b/ChangeLog
index 1088c13f58648f2cd2259838c48cb4f5d0d496d1..aa93c53dcbea22fccc55b7a439a96f91c28381f2 100644 (file)
--- a/ChangeLog
+++ b/ChangeLog
@@ -1,4 +1,35 @@
-               CHANGES IN APE VERSION 2.5-1
+               CHANGES IN APE VERSION 2.5-2
+
+
+NEW FEATURES
+
+    o There is now a print method for results from ace().
+
+
+BUG FIXES
+
+    o as.phylo.hclust() used to multiply edge lengths by 2.
+
+    o A minor bug was fixed in rTraitDisc().
+
+    o ace() sometimes failed (parameter value was NaN and the optimisation
+      failed).
+
+
+DEPRECATED & DEFUNCT
+
+    o evolve.phylo() and plot.ancestral() have been removed.
+
+    o chronogram(), ratogram(), and NPRS.criterion() have been removed.
+
+
+OTHER CHANGES
+
+    o nj() has been improved and is now about 30% faster.
+
+
+
+               CHANGES IN APE VERSION 2.5-1
 
 
 NEW FEATURES