bug fix in read.dna + change the default of tol in drop.fossil

[ape.git] / ChangeLog

diff --git a/ChangeLog b/ChangeLog
index 057cf583a570dd78448d2e318059d3aaadd33e53..a4985e5dfcc71b19f3d191007abe15da6ec9bbab 100644 (file)
--- a/ChangeLog
+++ b/ChangeLog
@@ -1,3 +1,29 @@
+               CHANGES IN APE VERSION 2.6-3
+
+
+NEW FEATURES
+
+    o rTraitCont() and rTraitDisc() gains a '...' argument used with
+      user-defined models (suggestion by Gene Hunt).
+
+
+BUG FIXES
+
+    o as.hclust.phylo() now returns an error with unrooted trees.
+
+    o as.hclust.phylo() failed with trees with node labels (thanks to
+      Jinlong Zhang for pointing this bug out).
+
+    o read.dna(, "fasta") failed if sequences were not all of the same
+      length.
+
+
+OTHER CHANGES
+
+    o In drop.fossil() the default tol = 0 has been raised to 1e-8.
+
+
+
                CHANGES IN APE VERSION 2.6-2
 
 
@@ -32,7 +58,10 @@ BUG FIXES
       cutree() or rect.hclust().
 
     o write.tree() did not output correctly node labels (thanks to Naim
-      Matasci for the fix).
+      Matasci and Jeremy Beaulieu for the fix).
+
+    o ace(type = "discrete") has been improved thanks to Naim Marasci and
+      Jeremy Beaulieu.