fixes for ape 2.3-1

[ape.git] / ChangeLog

diff --git a/ChangeLog b/ChangeLog
index efef3ba6cedea36dba17a9e51cb601bab081a324..98602f93fd35b93c2965986ebbc415dd68b2f902 100644 (file)
--- a/ChangeLog
+++ b/ChangeLog
@@ -3,11 +3,16 @@
 
 NEW FEATURES
 
+    o The new function is.monophyletic tests the monophyly of a group.
+
     o There is now a c() method for lists of class "DNAbin".
 
     o yule.cov() now fits the null model, and its help page has been
       corrected with respect to this change.
 
+    o drop.tip() has a new option 'rooted' to force (or not) a tree
+      to be treated as (un)rooted.
+
 
 BUG FIXES
 
@@ -26,6 +31,10 @@ BUG FIXES
       the fix. With other improvements, this function is now about 6
       times faster.
 
+    o write.tree() failed with objects of class "multiPhylo".
+
+    o drop.tip(, subtree = TRUE) sometimes shuffled tip labels.
+
 
 OTHER CHANGES
 
@@ -36,6 +45,9 @@ OTHER CHANGES
 
     o rcoal() is now faster.
 
+
+DEPRECATED & DEFUNCT
+
     o klastorin() has been removed.