+ CHANGES IN APE VERSION 2.4-1
+
+
+NEW FEATURES
+
+ o rtree() and rcoal() now accept a numeric vector for the 'br'
+ argument.
+
+
+BUG FIXES
+
+ o bind.tree() failed when 'y' had no root edge.
+
+ o read.nexus() shuffled tip labels when the trees have no branch
+ lengths and there is a TRANSLATE block.
+
+ o plot.multiPhylo() crashed R when plotting a list of trees with
+ "compressed tip labels".
+
+ o write.nexus() did not translate the taxa names when asked for.
+
+ o plot.phylo(type = "fan") did not rotate the tip labels correctly
+ when the tree has branch lengths.
+
+
+
CHANGES IN APE VERSION 2.4
o plot(phy, root.edge = TRUE) failed if there was no $root.edge in
the tree: the argument is now ignored.
+ o add.scale.bar() failed when 'x' and 'y' were given (thanks to Janet
+ Young for the fix).
+
OTHER CHANGES
o The argument 'adj' in [node][tip][edge]labels() now works when
using 'pie' or 'thermo'.
+ o A more informative message error is now returned by dist.dna() when
+ 'model' is badly specified (partial matching of this argument is
+ done now).
+
o Deprecated functions are now listed in a help page: see
help("ape-defunct") with the quotes.
o The functions heterozygosity, nuc.div, theta.h, theta.k and
theta.s have been moved from ape to pegas.
+ o The functions mlphylo, DNAmodel and sh.test have been removed.
+
CHANGES IN APE VERSION 2.3-3
OTHER CHANGES
- o There is now a general help page displayed with '?ape'
+ o There is now a general help page displayed with '?ape'.