fix bug in read.nexus()

[ape.git] / ChangeLog

diff --git a/ChangeLog b/ChangeLog
index a3923a68c8dbcc4856a24e6622e1a5076cdba634..8891e33091e47f5e69e6c3dce93857bb91a74b69 100644 (file)
--- a/ChangeLog
+++ b/ChangeLog
@@ -1,3 +1,16 @@
+               CHANGES IN APE VERSION 2.2-3
+
+
+BUG FIXES
+
+    o chronopl() did not work with CV = TRUE.
+
+    o read.nexus() did not work correctly in some situations (trees on
+      multiple lines with different numbers of lines and/or with
+      comments inserted within the trees).
+
+
+
                CHANGES IN APE VERSION 2.2-2
 
 
@@ -6,6 +19,9 @@ NEW FEATURES
     o dist.gene() has been substantially improved and gains an option
       'pairwise.deletion'.
 
+    o cbind.DNAbin() has a new option 'fill.with.gaps' and is now
+      more flexible.
+
 
 BUG FIXES
 
@@ -28,8 +44,8 @@ OTHER CHANGES
     o phymltest() has been updated for PhyML 3.0 and gains an option
       'append', whereas the option 'path2exec' has been removed.
 
-    o rbind.DNAbin() now accepts a single matrix which is returned
-      unchanged instead of an error.
+    o rbind.DNAbin() and cbind.DNAbin() now accept a single matrix
+      which is returned unchanged (instead of an error).
 
     o The data sets bird.orders and bird.families are now stored as
       Newick strings; i.e., the command data(bird.orders) calls