bug fix in read.nexus + new ?ape man page

[ape.git] / ChangeLog

diff --git a/ChangeLog b/ChangeLog
index 5a2243512b88688366a501473e8fabd033616fdd..6e2f4f15ac1ac7ee4619f2f18504019c1227f0b3 100644 (file)
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+++ b/ChangeLog
@@ -1,6 +1,32 @@
+               CHANGES IN APE VERSION 2.2-4
+
+BUG FIXES
+
+    o The bug fix in read.nexus() in version 2.2-3 was wrong: this is
+      now fixed. (thanks to Peter Wragg for the fix!)
+
+
+OTHER CHANGES
+
+    o There is now a general help page displayed with '?ape' 
+
+
+
                CHANGES IN APE VERSION 2.2-3
 
 
+NEW FEATURES
+
+    o The new function extract.clade extracts a clade from a tree by
+      specifying a node number or label.
+
+    o fastme.bal() has two new options 'spr' and 'tbr' to perform tree
+      operations of the same names.
+
+    o dist.dna() can now return the number of site differences by
+      specifying model="N".
+
+
 BUG FIXES
 
     o chronopl() did not work with CV = TRUE.
@@ -13,6 +39,14 @@ BUG FIXES
       the number of lineages with non-binary trees.
 
 
+OTHER CHANGES
+
+    o ape has now a namespace.
+
+    o drip.tip() has been improved: it should be much faster and work
+      better in some cases (e.g., see the example in ?zoom).
+
+
 
                CHANGES IN APE VERSION 2.2-2