changed rtree and rcoal

[ape.git] / ChangeLog

diff --git a/ChangeLog b/ChangeLog
index 402cf950ff587b3fb54fe40fb26c9f6e2e28f369..46aa1e3b065d760852511aa9ecfcea8b573e1f01 100644 (file)
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+++ b/ChangeLog
@@ -1,3 +1,26 @@
+               CHANGES IN APE VERSION 2.4-1
+
+
+NEW FEATURES
+
+    o rtree() and rcoal() now accept a numeric vector for the 'br'
+      argument.
+
+
+BUG FIXES
+
+    o bind.tree() failed when 'y' had no root edge.
+
+    o read.nexus() shuffled tip labels when the trees have no branch
+      lengths and there is a TRANSLATE block.
+
+    o plot.multiPhylo() crashed R when plotting a list of trees with
+      "compressed tip labels".
+
+    o write.nexus() did not translate the taxa names when asked for.
+
+
+
                CHANGES IN APE VERSION 2.4
 
 
@@ -44,6 +67,8 @@ DEPRECATED & DEFUNCT
     o The functions heterozygosity, nuc.div, theta.h, theta.k and
       theta.s have been moved from ape to pegas.
 
+    o The functions mlphylo, DNAmodel and sh.test have been removed.
+
 
 
                CHANGES IN APE VERSION 2.3-3
@@ -204,7 +229,7 @@ BUG FIXES
 
 OTHER CHANGES
 
-    o There is now a general help page displayed with '?ape' 
+    o There is now a general help page displayed with '?ape'.