+ CHANGES IN APE VERSION 2.6-4
+
+
+NEW FEATURES
+
+ o There is a new image() method for "DNAbin" objects: it plots DNA
+ alignments in a flexible and efficient way.
+
+ o base.freq() gains an option 'all' to count all the possible bases
+ including the ambiguous ones (defaults to FALSE).
+
+ o read.nexus() now writes tree names in the NEXUS file if given a list
+ of trees with names.
+
+
+BUG FIXES
+
+ o prop.part() failed in some situations with unrooted trees.
+
+ o read.nexus() shuffled node labels when a TRANSLATE block was
+ present.
+
+ o varCompPhylip() did not work if 'exec' was specified.
+
+ o bind.tree() shuffled node labels when position > 0 and 'where'
+ was not the root.
+
+
+OTHER CHANGES
+
+ o BaseProportion in src/dist_dna.c has been modified.
+
+ o A number of functions in src/tree_build.c have been modified.
+
+ o The matching representation has now only two columns as the third
+ column was redundant.
+
+
+
CHANGES IN APE VERSION 2.6-3
o plot.phylo() did not recycle values of 'font', 'cex' and
'tip.color' correctly when type = "fan" or "radial".
+ o plot.phylo() ignored 'label.offset' when type = "radial", "fan", or
+ "unrooted" with lab4ut = "axial" (the placement of tip labels still
+ needs to be improved with lab4ut = "horizontal").
+
OTHER CHANGES