moved functions from ape to pegas -> ape 2.4

[ape.git] / ChangeLog

diff --git a/ChangeLog b/ChangeLog
index 5028e760afe10da2418ce224643490dad9d12b39..13751957239f34beb73b573549fa7c40ef51e7ba 100644 (file)
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+++ b/ChangeLog
@@ -1,3 +1,30 @@
+               CHANGES IN APE VERSION 2.4
+
+
+NEW FEATURES
+
+    o base.freq() has a new option 'freq' to return the counts; the
+      default is still to return the proportions.
+
+
+BUG FIXES
+
+    o seg.sites() did not handle ambiguous nucleotides correctly: they are
+      now ignored.
+
+
+DEPRECATED & DEFUNCT
+
+    o The functions heterozygosity, nuc.div, theta.h, theta.k and
+      theta.s have been moved from ape to pegas.
+
+
+OTHER CHANGES
+
+    o Deprecated functions are now listed in a help page: see
+      help("ape-defunct"), with the quotes!
+
+
                CHANGES IN APE VERSION 2.3-3