various corrections

[ape.git] / ChangeLog

diff --git a/ChangeLog b/ChangeLog
index f59984ba0a79b20bbd2693075d1c0422eaa1aaf5..1088c13f58648f2cd2259838c48cb4f5d0d496d1 100644 (file)
--- a/ChangeLog
+++ b/ChangeLog
@@ -5,8 +5,14 @@ NEW FEATURES
 
     o The new function stree generates trees with regular shapes.
 
-    o drop.tip(), extract.clade(), and root() now have an 'interactive'
-      option to make the operation on a plotted tree.
+    o It is now possible to bind two trees with x + y (see ?bind.tree for
+      details).
+
+    o drop.tip(), extract.clade(), root(), and bind.tree() now have an
+      'interactive' option to make the operation on a plotted tree.
+
+    o cophyloplot() gains two new arguments 'lwd' and 'lty' for the
+      association links; they are recycled like 'col' (which wasn't before).
 
 
 BUG FIXES
@@ -18,6 +24,25 @@ BUG FIXES
       with NA values. Nothing is drawn now like with 'text' or 'pch'.
       The same bug occurred with the 'pie' option.
 
+    o A bug was fixed in compar.ou() and the help page was clarified.
+
+    o bind.tree() has been rewritten fixing several bugs and making it
+      more efficient.
+
+    o plot.phylo(type = "p") sometimes failed to colour correctly the
+      vertical lines representing the nodes.
+
+    o plot.phylo(direction = "l", x.lim = 30) failed to plot the branches
+      in the correct direction though the tip labels were displayed
+      correctly.
+
+
+OTHER CHANGES
+
+    o The c, cbind, and rbind methods for "DNAbin" objetcs now check that
+      the sequences are correctly stored (in a list for c, in a matrix
+      for the two other functions).
+
 
 
        CHANGES IN APE VERSION 2.5