added warning for duplicate @RG tag in header

[bamtools.git] / BamWriter.h

diff --git a/BamWriter.h b/BamWriter.h
index 14de8b557c130ea5c5da567cca9482093557df27..31c7d61b8a3fe259ed353d54014cc3dc068a9e1e 100644 (file)
--- a/BamWriter.h
+++ b/BamWriter.h
@@ -1,5 +1,5 @@
 // ***************************************************************************\r
-// BamWriter.h (c) 2009 Michael Strömberg, Derek Barnett\r
+// BamWriter.h (c) 2009 Michael Str�mberg, Derek Barnett\r
 // Marth Lab, Department of Biology, Boston College\r
 // All rights reserved.\r
 // ---------------------------------------------------------------------------\r
@@ -37,6 +37,8 @@ class BamWriter {
         void Open(const std::string& filename, const std::string& samHeader, const BamTools::RefVector& referenceSequences);\r
         // saves the alignment to the alignment archive\r
         void SaveAlignment(const BamTools::BamAlignment& al);\r
+        // saves the (partial) alignment, using support data, to the alignment archive\r
+        void SaveAlignment(const BamTools::BamAlignment& al, const BamTools::BamAlignmentSupportData& supportData);\r
 \r
     // private implementation\r
     private:\r