void Open(const std::string& filename, const std::string& samHeader, const BamTools::RefVector& referenceSequences);\r
// saves the alignment to the alignment archive\r
void SaveAlignment(const BamTools::BamAlignment& al);\r
- // saves the (partial) alignment, using support data, to the alignment archive\r
- void SaveAlignment(const BamTools::BamAlignment& al, const BamTools::BamAlignmentSupportData& supportData);\r
\r
// private implementation\r
private:\r