further cleanup of duplicate @RG tag warning reporting

[bamtools.git] / BamAux.h

diff --git a/BamAux.h b/BamAux.h
index 3d14a46fd19549ca6fb4601f05fa99656f7a3d06..46592497888843f7e14295f62290ecad73fa620f 100644 (file)
--- a/BamAux.h
+++ b/BamAux.h
@@ -3,7 +3,7 @@
 // Marth Lab, Department of Biology, Boston College\r
 // All rights reserved.\r
 // ---------------------------------------------------------------------------\r
-// Last modified: 14 April 2010 (DB)\r
+// Last modified: 8 June 2010 (DB)\r
 // ---------------------------------------------------------------------------\r
 // Provides the basic constants, data structures, etc. for using BAM files\r
 // ***************************************************************************\r
@@ -154,9 +154,36 @@ struct BamAlignment {
 // ----------------------------------------------------------------\r
 // Auxiliary data structs & typedefs\r
 \r
+struct BamAlignmentSupportData {\r
+      \r
+    // data members\r
+    std::string AllCharData;\r
+    uint32_t    BlockLength;\r
+    uint32_t    NumCigarOperations;\r
+    uint32_t    QueryNameLength;\r
+    uint32_t    QuerySequenceLength;\r
+    \r
+    // constructor\r
+    BamAlignmentSupportData(void)\r
+        : BlockLength(0)\r
+        , NumCigarOperations(0)\r
+        , QueryNameLength(0)\r
+        , QuerySequenceLength(0)\r
+    { }\r
+};\r
+\r
 struct CigarOp {\r
+  \r
+    // data members\r
     char     Type;   // Operation type (MIDNSHP)\r
     uint32_t Length; // Operation length (number of bases)\r
+    \r
+    // constructor\r
+    CigarOp(const char type = '\0', \r
+            const uint32_t length = 0) \r
+        : Type(type)\r
+        , Length(length) \r
+    { }\r
 };\r
 \r
 struct RefData {\r