// ***************************************************************************
// bamtools_options.h (c) 2010 Derek Barnett, Erik Garrison
// Marth Lab, Department of Biology, Boston College
// ***************************************************************************
// bamtools_options.h (c) 2010 Derek Barnett, Erik Garrison
// Marth Lab, Department of Biology, Boston College
// ---------------------------------------------------------------------------
// Parses command line arguments and creates a help menu
// ---------------------------------------------------------------------------
// ---------------------------------------------------------------------------
// Parses command line arguments and creates a help menu
// ---------------------------------------------------------------------------
// parses the command line
static void Parse(int argc, char* argv[], int offset = 0);
// sets the program info
// parses the command line
static void Parse(int argc, char* argv[], int offset = 0);
// sets the program info
- static void SetProgramInfo(const std::string& programName, const std::string& description, const std::string& arguments);
+ static void SetProgramInfo(const std::string& programName,
+ const std::string& description,
+ const std::string& arguments);
// returns string representation of stdin
static const std::string& StandardIn(void);
// returns string representation of stdout
// returns string representation of stdin
static const std::string& StandardIn(void);
// returns string representation of stdout
// stores the options in a map
static std::map<std::string, OptionValue> m_optionsMap;
// string representation of stdin
// stores the options in a map
static std::map<std::string, OptionValue> m_optionsMap;
// string representation of stdin