, HasUnusedModelThreshold(false)
, InputBamFilename(Options::StandardIn())
, OutputBamFilename(Options::StandardOut())
, StatsFilename("")
, ReadNamesFilename(DEFAULT_READNAME_FILE)
, ConfidenceInterval(DEFAULT_CONFIDENCE_INTERVAL)
, HasUnusedModelThreshold(false)
, InputBamFilename(Options::StandardIn())
, OutputBamFilename(Options::StandardOut())
, StatsFilename("")
, ReadNamesFilename(DEFAULT_READNAME_FILE)
, ConfidenceInterval(DEFAULT_CONFIDENCE_INTERVAL)