// BamWriter.h (c) 2009 Michael Str�mberg, Derek Barnett\r
// Marth Lab, Department of Biology, Boston College\r
// ---------------------------------------------------------------------------\r
// BamWriter.h (c) 2009 Michael Str�mberg, Derek Barnett\r
// Marth Lab, Department of Biology, Boston College\r
// ---------------------------------------------------------------------------\r
// ---------------------------------------------------------------------------\r
// Provides the basic functionality for producing BAM files\r
// ***************************************************************************\r
// ---------------------------------------------------------------------------\r
// Provides the basic functionality for producing BAM files\r
// ***************************************************************************\r
// returns true if BAM file is open for writing\r
bool IsOpen(void) const;\r
// opens a BAM file for writing\r
// returns true if BAM file is open for writing\r
bool IsOpen(void) const;\r
// opens a BAM file for writing\r
const SamHeader& samHeader,\r
const RefVector& referenceSequences);\r
// saves the alignment to the alignment archive\r
const SamHeader& samHeader,\r
const RefVector& referenceSequences);\r
// saves the alignment to the alignment archive\r