- if (openIndexes) {
-
- // leave index filename empty
- // this allows BamReader & BamIndex to search for any available
- // useStandardIndex gives hint to prefer BAI over BTI
- openedOK = reader->Open(filename, "", true, preferStandardIndex);
- }
-
- // ignoring index file(s)
- else openedOK = reader->Open(filename);
+ openedOK = reader->Open(filename, "", openIndexes, preferStandardIndex);