//store in temps to avoid multiple repetitive function calls
//store in temps to avoid multiple repetitive function calls
- tempA = shared1->getAbundance(j);
- tempB = shared2->getAbundance(j);
+ tempA = shared[0]->getAbundance(j);
+ tempB = shared[1]->getAbundance(j);
+ float relA = tempA / Atotal;
+ float relB = tempB / Btotal;
- a += tempA * tempA;
- b += tempB * tempB;
- d += tempA * tempB;
+ a += relA * relA;
+ b += relB * relB;
+ d += relA * relB;
}
}
- a /= double(Atotal * Atotal);
- b /= double(Btotal * Btotal);
- d /= double(Atotal * Btotal);
-
- morhorn = (2 * d) / (a + b);
-
- if (isnan(morhorn) || isinf(morhorn)) { morhorn = 0; }
+ morhorn = 1- (2 * d) / (a + b);
+
+ if (isnan(morhorn) || isinf(morhorn)) { morhorn = 1; }
data[0] = morhorn;
return data;
}
catch(exception& e) {
data[0] = morhorn;
return data;
}
catch(exception& e) {
- cout << "Standard Error: " << e.what() << " has occurred in the MorHorn class Function getValues. Please contact Pat Schloss at pschloss@microbio.umass.edu." << "\n";
+ m->errorOut(e, "MorHorn", "getValues");
exit(1);
}
exit(1);
}
- catch(...) {
- cout << "An unknown error has occurred in the MorHorn class Function getValues. Please contact Pat Schloss at pschloss@microbio.umass.edu." << "\n";