+string SeqErrorCommand::getOutputFileNameTag(string type, string inputName=""){
+ try {
+ string outputFileName = "";
+ map<string, vector<string> >::iterator it;
+
+ //is this a type this command creates
+ it = outputTypes.find(type);
+ if (it == outputTypes.end()) { m->mothurOut("[ERROR]: this command doesn't create a " + type + " output file.\n"); }
+ else {
+ if (type == "errorsummary") { outputFileName = "error.summary"; }
+ else if (type == "errorseq") { outputFileName = "error.seq"; }
+ else if (type == "errorquality") { outputFileName = "error.quality"; }
+ else if (type == "errorqualforward") { outputFileName = "error.qual.forward"; }
+ else if (type == "errorqualreverse") { outputFileName = "error.qual.reverse"; }
+ else if (type == "errorforward") { outputFileName = "error.seq.forward"; }
+ else if (type == "errorreverse") { outputFileName = "error.seq.reverse"; }
+ else if (type == "errorcount") { outputFileName = "error.count"; }
+ else if (type == "errormatrix") { outputFileName = "error.matrix"; }
+ else if (type == "errorchimera") { outputFileName = "error.chimera"; }
+ else if (type == "errorref-query") { outputFileName = "error.ref-query"; }
+ else { m->mothurOut("[ERROR]: No definition for type " + type + " output file tag.\n"); m->control_pressed = true; }
+ }
+ return outputFileName;
+ }
+ catch(exception& e) {
+ m->errorOut(e, "SeqErrorCommand", "getOutputFileNameTag");
+ exit(1);
+ }
+}
+//**********************************************************************************************************************