/***********************************************************************/
ReadCluster::ReadCluster(string distfile, float c, string o, bool s){
/***********************************************************************/
ReadCluster::ReadCluster(string distfile, float c, string o, bool s){
try {
//convert phylip file to column file
map<int, string> rowToName;
try {
//convert phylip file to column file
map<int, string> rowToName;
if(nameMap->count(name)==0){ m->mothurOut("Error: Sequence '" + name + "' was not found in the names file, please correct"); m->mothurOutEndLine(); }
for(int j=0;j<nseqs;j++){
if(nameMap->count(name)==0){ m->mothurOut("Error: Sequence '" + name + "' was not found in the names file, please correct"); m->mothurOutEndLine(); }
for(int j=0;j<nseqs;j++){
in2 >> first >> second >> dist;
out2 << rowToName[first] << '\t' << rowToName[second] << '\t' << dist << endl;
in2 >> first >> second >> dist;
out2 << rowToName[first] << '\t' << rowToName[second] << '\t' << dist << endl;