- vector< vector<float> > findQav(int, int);
- vector<float> calcFreq(vector<Sequence*>);
- vector<float> getCoef(int, int);
-
- vector<Sequence> findPairs(int, int);
- vector< vector<int> > findWindows(int, int);
- vector< vector<float> > calcObserved(int, int);
- vector< vector<float> > calcExpected(int, int);
- vector<float> calcDE(int, int);
- vector<float> calcDist(int, int);
-
- void createProcessesSpots();
- void createProcesses();
-
-
+ Sequence* findPairs(Sequence*);
+
+ void createProcessesQuan();
+ int doPrep();
+ void printQuanFile(string, string);