final commit for ape 3.0-8

[ape.git] / man / yule.cov.Rd

diff --git a/man/yule.cov.Rd b/man/yule.cov.Rd
index 7e3b1a2fb395989daf87661fa8feed9d04864da2..9710a94d743e4a091bc60b6a5eb2cc410b4eeee0 100644 (file)
--- a/man/yule.cov.Rd
+++ b/man/yule.cov.Rd
@@ -43,7 +43,7 @@ yule.cov(phy, formula, data = NULL)
   \item a phylogenetic tree which may contain multichotomies;
 
   \item a formula which specifies the predictors of the model described
   \item a phylogenetic tree which may contain multichotomies;
 
   \item a formula which specifies the predictors of the model described

-  above: this is given as a standard R formula and has no response (no
+  above: this is given as a standard \R formula and has no response (no

   left-hand side term), for instance: \code{~ x + y}, it can include
   interactions (\code{~ x + a * b}) (see \code{\link[stats]{formula}}
   for details);
   left-hand side term), for instance: \code{~ x + y}, it can include
   interactions (\code{~ x + a * b}) (see \code{\link[stats]{formula}}
   for details);


@@ -55,7 +55,7 @@ yule.cov(phy, formula, data = NULL)
   be equal to the number of tips of the tree + the number of nodes. The
   order is the following: first the values for the tips in the same
   order than for the labels, then the values for the nodes sequentially
   be equal to the number of tips of the tree + the number of nodes. The
   order is the following: first the values for the tips in the same
   order than for the labels, then the values for the nodes sequentially

-  from the root to the most terminal nodes (i.e. in the order given by
+  from the root to the most terminal nodes (i.e., in the order given by

   \code{phy$edge}).
 }
 
   \code{phy$edge}).
 }
 


@@ -78,7 +78,7 @@ method. This can be done with the function \code{\link{ace}}.
   Paradis, E. (2005) Statistical analysis of diversification with
   species traits. \emph{Evolution}, \bold{59}, 1--12.
 }
   Paradis, E. (2005) Statistical analysis of diversification with
   species traits. \emph{Evolution}, \bold{59}, 1--12.
 }

-\author{Emmanuel Paradis \email{Emmanuel.Paradis@mpl.ird.fr}}
+\author{Emmanuel Paradis}

 \seealso{
   \code{\link{branching.times}}, \code{\link{diversi.gof}},
   \code{\link{diversi.time}}, \code{\link{ltt.plot}},
 \seealso{
   \code{\link{branching.times}}, \code{\link{diversi.gof}},
   \code{\link{diversi.time}}, \code{\link{ltt.plot}},