-write.nexus(..., file = "", translate = TRUE, original.data = TRUE)
+write.nexus(..., file = "", translate = TRUE, original.data = NULL)
\item{translate}{a logical, if \code{TRUE} (the default) a translation
of the tip labels is done which are replaced in the parenthetic
representation with tokens.}
\item{translate}{a logical, if \code{TRUE} (the default) a translation
of the tip labels is done which are replaced in the parenthetic
representation with tokens.}
- \item{original.data}{a logical, if \code{TRUE} (the default) the
- data in the original NEXUS file are eventually written in
- \code{"file"} (see below).}
+ \item{original.data}{deprecated; will be removed soon.}
If several trees are given, they must have all the same tip labels.
If among the objects given some are not trees of class \code{"phylo"},
If several trees are given, they must have all the same tip labels.
If among the objects given some are not trees of class \code{"phylo"},
\seealso{
\code{\link{read.nexus}}, \code{\link{read.tree}},
\code{\link{write.tree}}, \code{\link{read.nexus.data}},
\seealso{
\code{\link{read.nexus}}, \code{\link{read.tree}},
\code{\link{write.tree}}, \code{\link{read.nexus.data}},