moved functions from ape to pegas -> ape 2.4

[ape.git] / man / sh.test.Rd

diff --git a/man/sh.test.Rd b/man/sh.test.Rd
index ec367cd567b60c936d002fcffbb7cdde39685b3c..57e6a5d5ecad3d4981061cb70489b1544666efb6 100644 (file)
--- a/man/sh.test.Rd
+++ b/man/sh.test.Rd
@@ -7,8 +7,7 @@ sh.test(..., x, model = DNAmodel(), B = 100)
 \arguments{
   \item{...}{either a series of objects of class \code{"phylo"}
     separated by commas, or a list containing such objects.}
 \arguments{
   \item{...}{either a series of objects of class \code{"phylo"}
     separated by commas, or a list containing such objects.}

-  \item{x}{a list, a matrix, or a data frame containing the (aligned)
-    DNA sequences.}
+  \item{x}{a list or a matrix containing the (aligned) DNA sequences.}

   \item{model}{the model to be fitted to each tree (as an object of
     \code{"DNAmodel"}).}
   \item{B}{the number of bootstrap replicates.}
   \item{model}{the model to be fitted to each tree (as an object of
     \code{"DNAmodel"}).}
   \item{B}{the number of bootstrap replicates.}


@@ -19,9 +18,9 @@ sh.test(..., x, model = DNAmodel(), B = 100)
 }
 \details{
   The present implementation follows the original formulation of
 }
 \details{
   The present implementation follows the original formulation of

-  Shimodaira and Hasegawa (1999). A difference is that the bootstrap
+  Shimodaira and Hasegawa (1999) with the difference that the bootstrap

   resampling is done on the original sequence data rather than the RELL
   resampling is done on the original sequence data rather than the RELL

-  method as sugested by Shimodaira and Hasegawa.
+  method suggested by Shimodaira and Hasegawa.

 }
 \value{
   a numeric vector with the P-value associated with each tree given in
 }
 \value{
   a numeric vector with the P-value associated with each tree given in