BOTHlabels(... hozir = TRUE)

[ape.git] / man / dist.topo.Rd

diff --git a/man/dist.topo.Rd b/man/dist.topo.Rd
index 3fbedcd0761dc0649bf62775394ecb6a373d9f21..2017246d41cee719e9fe27e391175866f7ee57dc 100644 (file)
--- a/man/dist.topo.Rd
+++ b/man/dist.topo.Rd
@@ -19,7 +19,8 @@ dist.topo(x, y, method = "PH85")
 }
 \details{
   Two methods are available: the one by Penny and Hendy (1985), and the
 }
 \details{
   Two methods are available: the one by Penny and Hendy (1985), and the

-  branch length score by Kuhner and Felsenstein (1994).
+  branch length score by Kuhner and Felsenstein (1994). The trees are
+  always considered as unrooted.

 
   The topological distance is defined as twice the number of internal
   branches defining different bipartitions of the tips (Penny and Hendy
 
   The topological distance is defined as twice the number of internal
   branches defining different bipartitions of the tips (Penny and Hendy


@@ -54,7 +55,7 @@ dist.topo(x, y, method = "PH85")
   testing minimum-evolution trees. \emph{Molecular Biology and
     Evolution}, \bold{9}, 945--967.
 }
   testing minimum-evolution trees. \emph{Molecular Biology and
     Evolution}, \bold{9}, 945--967.
 }

-\author{Emmanuel Paradis \email{Emmanuel.Paradis@mpl.ird.fr}}
+\author{Emmanuel Paradis}

 \seealso{
   \code{\link{read.tree}} to read tree files in Newick format,
   \code{\link{cophenetic.phylo}}, \code{\link{prop.part}}
 \seealso{
   \code{\link{read.tree}} to read tree files in Newick format,
   \code{\link{cophenetic.phylo}}, \code{\link{prop.part}}