+/***********************************************************************/
+//this is used when you don't need the order vector
+vector<SharedRAbundFloatVector*> InputData::getSharedRAbundFloatVectors(){
+ try {
+ if(fileHandle){
+ if (format == "relabund") {
+ SharedRAbundFloatVector* SharedRelAbund = new SharedRAbundFloatVector(fileHandle);
+ if (SharedRelAbund != NULL) {
+ return SharedRelAbund->getSharedRAbundFloatVectors();
+ }
+ }else if (format == "sharedfile") {
+ SharedRAbundVector* SharedRAbund = new SharedRAbundVector(fileHandle);
+ if (SharedRAbund != NULL) {
+ vector<SharedRAbundVector*> lookup = SharedRAbund->getSharedRAbundVectors();
+ vector<SharedRAbundFloatVector*> lookupFloat = SharedRAbund->getSharedRAbundFloatVectors(lookup);
+ for (int i = 0; i < lookup.size(); i++) { delete lookup[i]; } lookup.clear();
+ return lookupFloat;
+ }
+
+ }
+ m->gobble(fileHandle);
+ }
+
+ //this is created to signal to calling function that the input file is at eof
+ vector<SharedRAbundFloatVector*> null; null.push_back(NULL);
+ return null;
+
+ }
+ catch(exception& e) {
+ m->errorOut(e, "InputData", "getSharedRAbundFloatVectors");
+ exit(1);
+ }
+}
+/***********************************************************************/
+vector<SharedRAbundFloatVector*> InputData::getSharedRAbundFloatVectors(string label){
+ try {
+ ifstream in;
+ string thisLabel;
+
+ m->openInputFile(filename, in);
+ m->saveNextLabel = "";
+
+ if(in){
+ if (format == "relabund") {
+ while (in.eof() != true) {
+
+ SharedRAbundFloatVector* SharedRelAbund = new SharedRAbundFloatVector(in);
+ if (SharedRelAbund != NULL) {
+ thisLabel = SharedRelAbund->getLabel();
+ //if you are at the last label
+ if (thisLabel == label) { in.close(); return SharedRelAbund->getSharedRAbundFloatVectors(); }
+ else {
+ //so you don't loose this memory
+ vector<SharedRAbundFloatVector*> lookup = SharedRelAbund->getSharedRAbundFloatVectors();
+ for (int i = 0; i < lookup.size(); i++) { delete lookup[i]; }
+ delete SharedRelAbund;
+ }
+ }else{ break; }
+ m->gobble(in);
+ }
+ }else if (format == "sharedfile") {
+ while (in.eof() != true) {
+
+ SharedRAbundVector* SharedRAbund = new SharedRAbundVector(in);
+ if (SharedRAbund != NULL) {
+ thisLabel = SharedRAbund->getLabel();
+
+ //if you are at the last label
+ if (thisLabel == label) {
+ in.close();
+ vector<SharedRAbundVector*> lookup = SharedRAbund->getSharedRAbundVectors();
+ vector<SharedRAbundFloatVector*> lookupFloat = SharedRAbund->getSharedRAbundFloatVectors(lookup);
+ for (int i = 0; i < lookup.size(); i++) { delete lookup[i]; } lookup.clear();
+ return lookupFloat;
+ }else {
+ //so you don't loose this memory
+ vector<SharedRAbundVector*> lookup = SharedRAbund->getSharedRAbundVectors();
+ for (int i = 0; i < lookup.size(); i++) { delete lookup[i]; } lookup.clear();
+ delete SharedRAbund;
+ }
+ }else{ break; }
+ m->gobble(in);
+ }
+ }
+ }
+
+
+ //this is created to signal to calling function that the input file is at eof
+ vector<SharedRAbundFloatVector*> null; null.push_back(NULL);
+ in.close();
+ return null;
+
+ }
+ catch(exception& e) {
+ m->errorOut(e, "InputData", "getSharedRAbundFloatVectors");
+ exit(1);
+ }
+}