-private:
- CommandFactory* validCommands;
- vector<string> outputNames;
- map<string, vector<string> > outputTypes;
+ vector<string> setParameters() { return outputNames; } //dummy, doesn't really do anything
+ string getCommandName() { return "help"; }
+ string getCommandCategory() { return "Hidden"; }
+ string getHelpString() { return "For more information about a specific command type 'commandName(help)' i.e. 'cluster(help)'"; }
+ string getOutputPattern(string) { return ""; }
+ string getCitation() { return "no citation"; }
+ string getDescription() { return "help"; }
+
+ int execute();
+ void help() { m->mothurOut(getHelpString()); }