-//**********************************************************************************************************************
-
-HelpCommand::HelpCommand(string option) {
-
- validCommands = CommandFactory::getInstance();
-
-}
-
-//**********************************************************************************************************************
-
-HelpCommand::~HelpCommand(){}
-
-//**********************************************************************************************************************
-
-int HelpCommand::execute(){
- validCommands->printCommands(cout);
- m->mothurOut("For more information about a specific command type 'commandName(help)' i.e. 'read.dist(help)'"); m->mothurOutEndLine();
-
- m->mothurOutEndLine(); m->mothurOut("For further assistance please refer to the Mothur manual on our wiki at http://www.mothur.org/wiki, or contact Pat Schloss at mothur.bugs@gmail.com.\n");
-
- return 0;
-}
-