+GetOTURepCommand::GetOTURepCommand(){
+ try {
+ abort = true;
+ //initialize outputTypes
+ vector<string> tempOutNames;
+ outputTypes["fasta"] = tempOutNames;
+ outputTypes["name"] = tempOutNames;
+ }
+ catch(exception& e) {
+ m->errorOut(e, "GetOTURepCommand", "GetOTURepCommand");
+ exit(1);
+ }
+}
+//**********************************************************************************************************************
+vector<string> GetOTURepCommand::getValidParameters(){
+ try {
+ string Array[] = {"fasta","list","label","name", "group", "weighted","sorted", "phylip","column","large","cutoff","precision","groups","outputdir","inputdir"};
+ vector<string> myArray (Array, Array+(sizeof(Array)/sizeof(string)));
+ return myArray;
+ }
+ catch(exception& e) {
+ m->errorOut(e, "GetOTURepCommand", "getValidParameters");
+ exit(1);
+ }
+}
+//**********************************************************************************************************************
+vector<string> GetOTURepCommand::getRequiredParameters(){
+ try {
+ string Array[] = {"fasta","list"};
+ vector<string> myArray (Array, Array+(sizeof(Array)/sizeof(string)));
+ return myArray;
+ }
+ catch(exception& e) {
+ m->errorOut(e, "GetOTURepCommand", "getRequiredParameters");
+ exit(1);
+ }
+}
+//**********************************************************************************************************************
+vector<string> GetOTURepCommand::getRequiredFiles(){
+ try {
+ vector<string> myArray;
+ return myArray;
+ }
+ catch(exception& e) {
+ m->errorOut(e, "GetOTURepCommand", "getRequiredFiles");
+ exit(1);
+ }
+}
+//**********************************************************************************************************************