+ ClusterFragmentsCommand();
+ ~ClusterFragmentsCommand() {}
+
+ vector<string> setParameters();
+ string getCommandName() { return "cluster.fragments"; }
+ string getCommandCategory() { return "Sequence Processing"; }
+
+ string getHelpString();
+ string getOutputPattern(string);
+ string getCitation() { return "http://www.mothur.org/wiki/Cluster.fragments"; }
+ string getDescription() { return "creates a namesfile with sequences that are a fragment of a larger sequence"; }
+
+ int execute();
+ void help() { m->mothurOut(getHelpString()); }