- ~ClusterDoturCommand();
- vector<string> getRequiredParameters();
- vector<string> getValidParameters();
- vector<string> getRequiredFiles();
- map<string, vector<string> > getOutputFiles() { return outputTypes; }
- int execute();
- void help();
+ ~ClusterDoturCommand(){}
+
+ vector<string> setParameters();
+ string getCommandName() { return "cluster.classic"; }
+ string getCommandCategory() { return "Clustering"; }
+ string getHelpString();
+ string getCitation() { return "Schloss PD, Handelsman J (2005). Introducing DOTUR, a computer program for defining operational taxonomic units and estimating species richness. Appl Environ Microbiol 71: 1501-6. \nhttp://www.mothur.org/wiki/Cluster.classic"; }
+ string getDescription() { return "cluster your sequences into OTUs using DOTUR’s method"; }
+
+ int execute();
+ void help() { m->mothurOut(getHelpString()); }