+use Maasha::Biopieces;
+use Maasha::Seq;
+
+
+# >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>><<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<
+
+
+my ( $options, $in, $out, $record, $frame, %new_record );
+
+$options = Maasha::Biopieces::parse_options(
+ [
+ { long => 'frames', short => 'f', type => 'list', mandatory => 'no', default => '1,2,3,-1,-2,-3', allowed => '1,2,3,-1,-2,-3', disallowed => undef },
+ ]
+);
+
+$in = Maasha::Biopieces::read_stream( $options->{ "stream_in" } );
+$out = Maasha::Biopieces::write_stream( $options->{ "stream_out" } );
+
+while ( $record = Maasha::Biopieces::get_record( $in ) )
+{
+ if ( $record->{ "SEQ" } )
+ {
+ if ( Maasha::Seq::seq_guess_type( $record->{ "SEQ" } ) eq "DNA" )
+ {
+ foreach $frame ( @{ $options->{ "frames" } } )
+ {
+ %new_record = %{ $record };
+
+ $new_record{ "SEQ" } = Maasha::Seq::translate( $record->{ "SEQ" }, $frame );
+ $new_record{ "SEQ_LEN" } = length $new_record{ "SEQ" };
+ $new_record{ "FRAME" } = $frame;
+
+ Maasha::Biopieces::put_record( \%new_record, $out );
+ }
+ }
+ }
+ else
+ {
+ Maasha::Biopieces::put_record( $record, $out );
+ }
+}
+
+Maasha::Biopieces::close_stream( $in );
+Maasha::Biopieces::close_stream( $out );
+
+
+# >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>><<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<
+
+
+BEGIN
+{
+ Maasha::Biopieces::status_set();
+}
+
+
+END
+{
+ Maasha::Biopieces::status_log();
+}
+
+
+# >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>><<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<
+