- { long => 'data_in', short => 'i', type => 'file!', mandatory => 'yes', default => undef, allowed => undef, disallowed => undef },
- { long => 'qual_in', short => 'q', type => 'file!', mandatory => 'yes', default => undef, allowed => undef, disallowed => undef },
- { long => 'num', short => 'n', type => 'uint', mandatory => 'no', default => undef, allowed => undef, disallowed => '0' },
- { long => 'convert2dec', short => 'c', type => 'flag', mandatory => 'no', default => undef, allowed => undef, disallowed => undef },
- { long => 'cutoff', short => 'C', type => 'int', mandatory => 'no', default => 20, allowed => undef, disallowed => undef },
- { long => 'soft_mask', short => 's', type => 'flag', mandatory => 'no', default => undef, allowed => undef, disallowed => undef },
- { long => 'mean', short => 'm', type => 'flag', mandatory => 'no', default => undef, allowed => undef, disallowed => undef },
+ { long => 'data_in', short => 'i', type => 'file!', mandatory => 'yes', default => undef, allowed => undef, disallowed => undef },
+ { long => 'qual_in', short => 'q', type => 'file!', mandatory => 'yes', default => undef, allowed => undef, disallowed => undef },
+ { long => 'num', short => 'n', type => 'uint', mandatory => 'no', default => undef, allowed => undef, disallowed => '0' },