-# >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> SUBROUTINES <<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<
-
-
-sub bowtie_index
-{
- # Martin A. Hansen, July 2009.
-
- # Create a bowtie index for fast sequence mapping.
-
- my ( $src_file, # filename of source file
- $dst_dir, # destination dir to store index
- $base_name, # base name of index
- $verbose, # verbose flag
- ) = @_;
-
- Maasha::Filesys::dir_create_if_not_exists( $dst_dir );
-
- if ( $verbose ) {
- Maasha::Common::run( "bowtie-build", "$src_file $dst_dir/$base_name" );
- } else {
- Maasha::Common::run( "bowtie-build", "$src_file $dst_dir/$base_name > /dev/null 2>&1" );
- }
-}
-
-