+ else if (strcmp(argv[1], "bam2fq") == 0) return main_bam2fq(argc-1, argv+1);
+ else if (strcmp(argv[1], "pad2unpad") == 0) return main_pad2unpad(argc-1, argv+1);
+ else if (strcmp(argv[1], "depad") == 0) return main_pad2unpad(argc-1, argv+1);
+ else if (strcmp(argv[1], "bedcov") == 0) return main_bedcov(argc-1, argv+1);
+ else if (strcmp(argv[1], "bamshuf") == 0) return main_bamshuf(argc-1, argv+1);
+ else if (strcmp(argv[1], "pileup") == 0) {
+ fprintf(stderr, "[main] The `pileup' command has been removed. Please use `mpileup' instead.\n");
+ return 1;
+ }