- int driver(int, int, vector<SharedRAbundVector*>, string);
- int driver(int, int, vector<string>, string, vector< vector<double> >&);
- int process(vector<SharedRAbundVector*>);
- int calcAnosim(ofstream&, int, vector<string>);
- double calcWithinBetween(vector<seqDist>&, vector<string>, double&);
- vector<seqDist> convertToRanks();