for(int i=0;i<seqAaln.length();i++){
if(seqAaln[i] != '-' && seqBaln[i] == '-') { seqAstart++; }
else if(seqAaln[i] == '-' && seqBaln[i] != '-') { seqBstart++; }
for(int i=0;i<seqAaln.length();i++){
if(seqAaln[i] != '-' && seqBaln[i] == '-') { seqAstart++; }
else if(seqAaln[i] == '-' && seqBaln[i] != '-') { seqBstart++; }