- if (os == "Linux") execname <- "phyml_3.0_linux32"
- if (os == "Darwin") execname <- "phyml_3.0_macintel"
- if (os == "Windows") execname <- "phyml_3.0_win32"
+ if (os == "Linux") execname <- "phyml_3.0.1_linux32"
+ if (os == "Darwin") execname <- "phyml_3.0.1_macintel"
+ if (os == "Windows") execname <- "phyml_3.0.1_win32"
tstv <- rep("-t e", N) # ignored by PhyML with JC69 or F81
inv <- rep(c("", "-v e"), length.out = N)
## no need to use the -c option of PhyML (4 categories by default if '-a e' is set):
tstv <- rep("-t e", N) # ignored by PhyML with JC69 or F81
inv <- rep(c("", "-v e"), length.out = N)
## no need to use the -c option of PhyML (4 categories by default if '-a e' is set):
- alpha <- rep(rep(c("", "-a e"), each = 2), length.out = N)
+ alpha <- rep(rep(c("-c 1", "-a e"), each = 2), length.out = N)