+ o A bug was introduced in prop.clades() with ape 3.0. The help page
+ has been clarified relative to the use of the option 'rooted'.
+
+ o mantel.test() printed a useless warning message.
+
+ o plot.phylo(, direction = "downward") ignored 'y.lim'.
+
+ o is.monophyletic() did not work correctly if 'tips' was not stored
+ as integers.
+
+ o prop.part() could make R crash if the first tree had many
+ multichotomies.
+
+ o njs(), bionjs(), and mvrs() now return an error if 'fs < 1'.
+
+ o SDM() did not work correctly. The code has also been generally
+ improved.
+
+
+OTHER CHANGES
+
+ o The DESCRIPTION file has been updated.
+
+ o The option 'original.data' of write.nexus() has been removed.
+
+ o The files bionjs.c, mvr.c, mvrs.c, njs.c, triangMtd.c, and
+ triangMtds.c have been improved which should fix some bugs in
+ the corresponding functions.
+
+ o dist.gene() now coerces input data frame as matrix resulting in
+ much faster calculations (thanks to a suggestion by Markus
+ Schlegel).
+