-CXXFLAGS= $(CFLAGS)
-### For ncurses: please apply `-D_NO_CURSES' if you do not have ncurses installed
-DFLAGS= -D_IOLIB=2 -D_FILE_OFFSET_BITS=64 #-D_NO_CURSES
-OBJS= bam.o bam_import.o bam_pileup.o bam_lpileup.o bam_sort.o bam_index.o \
- razf.o bgzf.o faidx.o bam_tview.o bam_maqcns.o bam_aux.o bam_plcmd.o \
- bam_mate.o bam_rmdup.o glf.o bam_stat.o kstring.o bam_md.o sam.o sam_view.o \
- bam_rmdupse.o
-PROG= razip bgzip samtools
-INCLUDES= -Izlib
-SUBDIRS= zlib . misc
+DFLAGS= -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE -D_CURSES_LIB=1
+LOBJS= bgzf.o kstring.o bam_aux.o bam.o bam_import.o sam.o bam_index.o \
+ bam_pileup.o bam_lpileup.o bam_md.o glf.o razf.o faidx.o knetfile.o \
+ bam_sort.o sam_header.o
+AOBJS= bam_tview.o bam_maqcns.o bam_plcmd.o sam_view.o \
+ bam_rmdup.o bam_rmdupse.o bam_mate.o bam_stat.o bam_color.o \
+ bamtk.o kaln.o
+PROG= samtools
+INCLUDES=
+SUBDIRS= . misc
+LIBPATH=
+LIBCURSES= -lcurses # -lXCurses