- Mantel's test, computation of minimum spanning tree, the population
- parameter theta based on various approaches, nucleotide diversity,
- generalized skyline plots, estimation of absolute evolutionary rates
- and clock-like trees using mean path lengths, non-parametric rate
- smoothing and penalized likelihood, classifying genes in trees using
- the Klastorin-Misawa-Tajima approach. Phylogeny estimation can be done
- with the NJ, BIONJ, ME, and ML methods.
+ Mantel's test, computation of minimum spanning tree, generalized
+ skyline plots, estimation of absolute evolutionary rates and
+ clock-like trees using mean path lengths, non-parametric rate
+ smoothing and penalized likelihood. Phylogeny estimation can be
+ done with the NJ, BIONJ, and ME methods.