private:
vector<int> structMap;
- string mapfile, fastafile, outputDir;
+ string mapfile, fastafile, outputDir, namefile;
bool abort;
int seqLength, haderror;
vector<string> outputNames;
map<string, vector<string> > outputTypes;
+ map<string, int> nameMap;
void readMap();
statData getStats(string sequence);