#include "readcluster.h"
/******************************************************************/
-//This command is an implementation of the HCluster algorythmn described in
+//This command is an implementation of the HCluster algorithmn described in
//ESPRIT: estimating species richness using large collections of 16S rRNA pyrosequences by
//Yijun Sun1,2,*, Yunpeng Cai2, Li Liu1, Fahong Yu1, Michael L. Farrell3, William McKendree3
//and William Farmerie1 1
vector<string> setParameters();
string getCommandName() { return "hcluster"; }
string getCommandCategory() { return "Clustering"; }
+
string getHelpString();
+ string getOutputPattern(string);
string getCitation() { return "Sun Y, Cai Y, Liu L, Yu F, Farrell ML, Mckendree W, Farmerie W (2009). ESPRIT: estimating species richness using large collections of 16S rRNA pyrosequences. Nucleic Acids Res 37: e76. \nhttp://www.mothur.org/wiki/Hcluster"; }
string getDescription() { return "cluster your sequences into OTUs using a distance matrix"; }